Usage guidelines
See installation for installation instructions
- Panpipes and the scverse
- General principles for running panpipes
- Panpipes sample submission file
- Using custom genes annotations: gene list formats
- Filtering mudata objects within preprocess pipeline
- Normalization methods
- Running pipeline modules from different entry points.
- Sample submission file for the ingestion of spatial data
- Integration methods implemented in panpipes
- Troubleshooting common issues when running panpipes