Tutorials

Check out the following tutorials which take you through common single-cell multimodal analysis steps with Panpipes:

• Ingest workflow

• Preprocessing workflow

• Integration workflow

• Clustering workflow

• Reference mapping workflow

• Visualization workflow

Spatial analysis:

• Ingesting 10X Visium data

• Ingesting MERFISH data

• Preprocessing spatial data

• Deconvoluting spatial data

Additional tutorials:

• Ingesting multiome from cellranger outputs

• Ingesting CITEseq + V(D)J from cellranger multi outputs

• Ingesting mouse data